Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AQR93352.1Putative viral replication protein. (334 aa)    
Predicted Functional Partners:
AQR93353.1
Hypothetical protein.
       0.773
oppF_2
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
  0.697
oppF_4
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
  0.697
oppF_5
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
  0.697
gsiD_1
Glutathione transport system permease protein GsiD.
  
 0.695
oppC_1
Oligopeptide transport system permease protein OppC.
  
 0.695
gsiD_2
Glutathione transport system permease protein GsiD.
  
 0.695
oppC_2
Oligopeptide transport system permease protein OppC.
  
 0.695
oppC_3
Oligopeptide transport system permease protein OppC.
  
 0.695
dppB_1
Dipeptide transport system permease protein DppB.
  
 0.676
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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