Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yafLPutative endopeptidase YafL precursor. (486 aa)    
Predicted Functional Partners:
AQR93395.1
Hypothetical protein.
       0.723
AQR93394.1
Hypothetical protein.
       0.653
AQR93397.1
Hypothetical protein.
       0.584
ftsE_1
Cell division ATP-binding protein FtsE.
 
 
 0.568
AQR93515.1
Hypothetical protein.
  
 
 0.523
lytG
Exo-glucosaminidase LytG precursor.
  
 
 0.509
ftsX_1
Cell division protein FtsX.
 
 
 
 0.506
ftsX_2
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.504
iap_1
Putative endopeptidase p60 precursor.
 
  
0.475
mepH_1
Murein DD-endopeptidase MepH precursor.
 
  
0.475
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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