Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR93407.1Hypothetical protein. (535 aa)    
Predicted Functional Partners:
AQR93405.1
Hypothetical protein.
 
     0.955
AQR93406.1
Hypothetical protein.
       0.810
AQR94430.1
Glyoxalase-like domain protein.
  
     0.626
AQR93458.1
Hypothetical protein.
  
     0.557
AQR95018.1
Hypothetical protein.
  
     0.529
AQR93491.1
Hypothetical protein.
  
     0.507
AQR96778.1
Hypothetical protein.
  
     0.504
AQR95852.1
Hypothetical protein.
 
    0.489
AQR95205.1
Bacterial Ig-like domain protein.
  
     0.471
AQR93283.1
Hypothetical protein.
  
     0.468
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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