STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glcR_1HTH-type transcriptional repressor GlcR. (197 aa)    
Predicted Functional Partners:
lacC
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.822
fruA_2
PTS system fructose-specific EIIABC component.
 
  
 0.815
glcR_2
HTH-type transcriptional repressor GlcR.
 
    
0.778
srlR_2
Glucitol operon repressor.
  
     0.763
glpR
Glycerol-3-phosphate regulon repressor.
  
     0.762
lacR_2
Lactose phosphotransferase system repressor.
  
     0.758
srlR_1
Glucitol operon repressor.
  
     0.751
ulaR
HTH-type transcriptional regulator UlaR.
  
     0.723
AQR93415.1
Putative phosphatase.
  
    0.497
manP
PTS system mannose-specific EIIBCA component.
 
  
 0.492
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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