STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
melR_1Melibiose operon regulatory protein. (284 aa)    
Predicted Functional Partners:
adaA_2
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.827
adaA_1
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.814
rhaS_4
HTH-type transcriptional activator RhaS.
 
 
 0.775
melR_2
Melibiose operon regulatory protein.
 
 
 0.730
soxS
Regulatory protein SoxS.
 
 
 0.710
melR_3
Melibiose operon regulatory protein.
 
 
0.706
cdhR
HTH-type transcriptional regulator CdhR.
 
 
0.701
xynB_3
Beta-xylosidase.
 
 
 0.688
gno
Gluconate 5-dehydrogenase.
 
 
 0.685
yesS_2
HTH-type transcriptional regulator YesS.
 
     0.676
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.