STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubRubredoxin. (52 aa)    
Predicted Functional Partners:
fprA2
Flavo-diiron protein FprA2.
 
 
 0.916
fprA1_1
Flavo-diiron protein FprA1.
 
 
 0.899
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 0.897
AQR96122.1
Hypothetical protein.
  
 
 0.881
hcr
NADH oxidoreductase hcr.
  
 
 0.867
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 0.865
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.767
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.767
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
  
 0.755
thiS
Sulfur carrier protein ThiS.
  
 0.731
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.