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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhdG_1Putative amino acid permease YhdG. (442 aa)    
Predicted Functional Partners:
eutB
Ethanolamine ammonia-lyase heavy chain.
 
  
 0.895
eutC
Ethanolamine ammonia-lyase light chain; Belongs to the EutC family.
 
  
 0.787
eutA
Reactivating factor for ethanolamine ammonia lyase.
 
     0.681
AQR94330.1
Cyclomaltodextrinase.
   
 0.588
AQR94554.1
Sucrose phosphorylase.
   
 0.588
glgE
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase.
   
 0.588
treA
Trehalose-6-phosphate hydrolase.
   
 0.588
malL
Oligo-1,6-glucosidase.
   
 0.588
nplT_1
Neopullulanase; Belongs to the glycosyl hydrolase 13 family.
   
 0.588
nplT_2
Neopullulanase.
   
 0.588
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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