Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR93489.1Hypothetical protein. (731 aa)    
Predicted Functional Partners:
AQR93488.1
Phage tail protein.
 
   0.988
AQR93487.1
Hypothetical protein.
 
 
 
 0.936
AQR93490.1
Hypothetical protein.
       0.773
AQR93486.1
Bacteriophage Gp15 protein.
 
     0.757
AQR98123.1
Phage portal protein.
 
  
 0.700
AQR93498.1
Hypothetical protein.
 
 
 0.673
AQR93485.1
Hypothetical protein.
       0.644
AQR95645.1
Collagen triple helix repeat.
   
   0.626
lytG
Exo-glucosaminidase LytG precursor.
   
   0.589
AQR95521.1
Phage antirepressor protein KilAC domain protein.
  
    0.549
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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