Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR93497.1Phage XkdN-like protein. (134 aa)    
Predicted Functional Partners:
xkdM_1
Phage-like element PBSX protein XkdM.
       0.566
AQR93495.1
Phage tail sheath protein.
       0.552
AQR93494.1
Hypothetical protein.
       0.529
AQR93498.1
Hypothetical protein.
       0.502
AQR93500.1
Hypothetical protein.
       0.451
AQR93503.1
Hypothetical protein.
       0.420
xkdQ1
Hypothetical protein.
       0.418
AQR93502.1
Hypothetical protein.
       0.416
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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