STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xkdQ1Hypothetical protein. (334 aa)    
Predicted Functional Partners:
AQR93503.1
Hypothetical protein.
 
    0.965
AQR93505.1
Hypothetical protein.
 
    0.952
AQR93504.1
Baseplate J-like protein.
 
     0.950
AQR93500.1
Hypothetical protein.
 
  
 0.945
AQR93502.1
Hypothetical protein.
       0.844
AQR93495.1
Phage tail sheath protein.
 
    0.835
xkdM_1
Phage-like element PBSX protein XkdM.
 
     0.825
AQR98107.1
Hypothetical protein.
 
    0.819
AQR93521.1
Hypothetical protein.
 
    0.815
AQR98105.1
Hypothetical protein.
 
    0.815
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.