STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93513.1Phage XkdN-like protein. (154 aa)    
Predicted Functional Partners:
xkdM_2
Phage-like element PBSX protein XkdM.
 
    0.955
AQR93516.1
LysM domain/BON superfamily protein.
 
    0.953
AQR93519.1
Hypothetical protein.
 
    0.944
AQR93520.1
Baseplate J-like protein.
 
    0.938
xkdQ2
Hypothetical protein.
 
     0.935
AQR93515.1
Hypothetical protein.
 
     0.928
xkdK
Phage tail sheath protein.
 
    0.923
AQR93521.1
Hypothetical protein.
 
    0.846
AQR93500.1
Hypothetical protein.
 
    0.790
AQR93514.1
Hypothetical protein.
       0.789
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.