Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR93545.1Helix-turn-helix domain protein. (269 aa)    
Predicted Functional Partners:
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.597
AQR96016.1
HTH domain protein.
  
     0.520
AQR96505.1
HTH domain protein.
  
     0.508
AQR93546.1
YtxH-like protein.
       0.480
hcnB_1
Hydrogen cyanide synthase subunit HcnB.
  
    0.469
folA_2
Dihydrofolate reductase.
  
     0.465
AQR93544.1
Hypothetical protein.
       0.463
nylB
6-aminohexanoate-dimer hydrolase.
  
   
 0.457
AQR93547.1
Hypothetical protein.
       0.453
AQR97350.1
Transcriptional activator FtrA.
 
 
0.441
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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