Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoR_2Alkaline phosphatase synthesis sensor protein PhoR. (345 aa)    
Predicted Functional Partners:
yycF_1
Transcriptional regulatory protein YycF.
 
 0.970
AQR93551.1
Macrolide transporter ATP-binding /permease protein.
 
   
 0.925
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD.
 
   
 0.844
yycF_5
Transcriptional regulatory protein YycF.
 
 0.806
regX3_3
Sensory transduction protein regX3.
 
 0.763
arlR_2
Response regulator ArlR.
 
 0.738
hssR_2
Heme response regulator HssR.
 
 0.732
walR_3
Transcriptional regulatory protein WalR.
 
 0.709
yycF_2
Transcriptional regulatory protein YycF.
 
 0.703
walR_2
Transcriptional regulatory protein WalR.
 
 0.703
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.