STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccM_1Putative electron transport protein YccM. (681 aa)    
Predicted Functional Partners:
apbE_1
Thiamine biosynthesis lipoprotein ApbE precursor; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
  
 0.757
dmsA
Dimethyl sulfoxide reductase DmsA precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.682
dmsB_1
Anaerobic dimethyl sulfoxide reductase chain B.
  
 
 0.666
dmsB_2
Anaerobic dimethyl sulfoxide reductase chain B.
  
 
 0.666
sfrB_1
NADPH-Fe(3+) oxidoreductase subunit beta.
  
 
 0.661
asrA
Anaerobic sulfite reductase subunit A.
  
 
  0.632
glpC
Anaerobic glycerol-3-phosphate dehydrogenase subunit C.
  
 
  0.632
hndC_3
NADP-reducing hydrogenase subunit HndC.
  
 
 0.608
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.596
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.596
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.