STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93601.1Hypothetical protein. (267 aa)    
Predicted Functional Partners:
ytrA_1
HTH-type transcriptional repressor YtrA.
 
  
 0.981
skfE_1
SkfA peptide export ATP-binding protein SkfE.
 
  
 0.969
AQR93184.1
ABC-2 family transporter protein.
  
 0.778
AQR94169.1
ABC-2 family transporter protein.
  
 0.778
AQR94439.1
ABC-2 family transporter protein.
  
 0.778
ytrA_2
HTH-type transcriptional repressor YtrA.
  
  
 0.678
ytrA_3
HTH-type transcriptional repressor YtrA.
  
  
 0.678
cbiN
Cobalt transport protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.
  
  
  0.560
cbiQ
Cobalt transport protein CbiQ.
 
  
 0.550
AQR93228.1
ABC-2 family transporter protein.
  
 
 0.538
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.