STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
skfE_1SkfA peptide export ATP-binding protein SkfE. (259 aa)    
Predicted Functional Partners:
ytrA_1
HTH-type transcriptional repressor YtrA.
 
  
 0.981
AQR93601.1
Hypothetical protein.
 
  
 0.969
AQR93184.1
ABC-2 family transporter protein.
  
 0.815
AQR94439.1
ABC-2 family transporter protein.
  
 0.814
AQR94169.1
ABC-2 family transporter protein.
  
 0.779
flgG_2
Flagellar basal-body rod protein FlgG.
   
  
 0.647
AQR93228.1
ABC-2 family transporter protein.
  
 
 0.549
AQR93229.1
ABC-2 family transporter protein.
  
 
 0.549
AQR94750.1
ABC-2 type transporter.
  
 
 0.549
AQR94752.1
ABC-2 type transporter.
  
 
 0.549
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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