STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smc_1Chromosome partition protein Smc. (766 aa)    
Predicted Functional Partners:
pip3
ABC-2 family transporter protein.
 
    
0.665
AQR96090.1
Hypothetical protein.
  
     0.471
graS_1
Sensor histidine kinase GraS.
  
 
   0.434
gltB_2
Ferredoxin-dependent glutamate synthase 1.
       0.420
sdpI
Immunity protein SdpI.
   
    0.416
AQR97583.1
Hypothetical protein.
  
     0.414
essB
Putative membrane protein essB.
  
  
 0.405
AQR94446.1
Hypothetical protein.
  
     0.400
dltD1
Hypothetical protein; DltD C-terminal region.
  
   
 0.400
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.