Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pip3ABC-2 family transporter protein. (763 aa)    
Predicted Functional Partners:
smc_1
Chromosome partition protein Smc.
 
    
0.665
AQR96090.1
Hypothetical protein.
  
     0.504
sdpI
Immunity protein SdpI.
   
    0.445
graS_1
Sensor histidine kinase GraS.
  
 
   0.432
dltD1
Hypothetical protein; DltD C-terminal region.
  
   
 0.426
AQR93624.1
TspO/MBR family protein.
       0.423
essB
Putative membrane protein essB.
  
  
 0.412
AQR94446.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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