STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93633.1ComEC family competence protein. (563 aa)    
Predicted Functional Partners:
AQR93632.1
Calcium-transporting ATPase 1.
 
    0.877
prs_2
Ribose-phosphate pyrophosphokinase.
 
  
 0.737
dprA
Hypothetical protein.
 
  
 0.732
comM
Competence protein ComM.
 
  
 0.714
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
  
 0.704
barA_2
Signal transduction histidine-protein kinase BarA.
  
  
 0.698
comEA
ComE operon protein 1.
  
  
 0.646
cinA_3
Putative competence-damage inducible protein; Belongs to the CinA family.
     
 0.633
rsbP
Phosphoserine phosphatase RsbP.
 
    0.600
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
  
 0.593
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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