Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR93656.1HIT-like protein. (114 aa)    
Predicted Functional Partners:
mtaB
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
  
   0.661
rsmE
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
     
 0.651
rpsU_1
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
    0.642
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
 
   0.603
AQR93658.1
Yqey-like protein.
     
 0.598
glnA_2
Glutamine synthetase.
  
   0.578
udk_1
Uridine kinase.
   
 0.511
lysS_1
lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
 
 0.505
dgkA
Undecaprenol kinase.
 
     0.488
lysS_2
lysine--tRNA ligase.
 
 
 0.482
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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