Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yqfCYabP family protein. (93 aa)    
Predicted Functional Partners:
yqfd
Putative stage IV sporulation protein YqfD.
 
  
 0.994
spoIIIAB
Stage III sporulation protein SpoAB.
  
  
 0.836
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.835
spoIIM
Stage II sporulation protein M.
  
   
 0.823
ylbJ
Sporulation integral membrane protein YlbJ.
 
   
 0.800
spoIIIAE
Stage III sporulation protein AE precursor.
  
  
 0.788
spoIIIAF
Hypothetical protein.
  
  
 0.779
spoIIIAA
Hypothetical protein.
  
   
 0.755
spoIIR
Stage II sporulation protein SpoIIR.
  
   
 0.733
spoIIE
Stage II sporulation protein E.
  
     0.730
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.