STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqfCYabP family protein. (93 aa)    
Predicted Functional Partners:
yqfd
Putative stage IV sporulation protein YqfD.
 
  
 0.995
spoIIIAB
Stage III sporulation protein SpoAB.
  
  
 0.842
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.829
spoIIM
Stage II sporulation protein M.
  
   
 0.827
ylbJ
Sporulation integral membrane protein YlbJ.
 
   
 0.788
spoIIIAE
Stage III sporulation protein AE precursor.
  
  
 0.780
spoIIIAF
Hypothetical protein.
  
  
 0.767
spoIIIAA
Hypothetical protein.
  
   
 0.750
spoIIR
Stage II sporulation protein SpoIIR.
  
   
 0.739
spoIIE
Stage II sporulation protein E.
  
     0.730
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.