STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
fldI_1R-phenyllactate dehydratase activator. (324 aa)    
Predicted Functional Partners:
AQR93673.1
2-hydroxyglutaryl-CoA dehydratase, D-component.
     0.995
AQR93674.1
Hypothetical protein.
 
   
 0.960
fldB
R-phenyllactate dehydratase subunit alpha precursor.
 0.848
fldI_2
R-phenyllactate dehydratase activator.
 
0.822
ctfB_1
Butyrate--acetoacetate CoA-transferase subunit B.
    
  0.588
ctfB_2
Butyrate--acetoacetate CoA-transferase subunit B.
    
  0.588
ctfB_3
Butyrate--acetoacetate CoA-transferase subunit B.
    
  0.588
accD_1
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
     
  0.478
echA8
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.449
AQR95989.1
Membrane protein of unknown function.
 
     0.437
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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