STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tetR_2Tetracycline repressor protein class B from transposon Tn10. (187 aa)    
Predicted Functional Partners:
AQR94440.1
Bacterial regulatory protein, tetR family.
  
     0.729
AQR94450.1
Hypothetical protein.
  
   
 0.607
fadR_2
Fatty acid metabolism regulator protein.
  
     0.510
AQR94650.1
Transcriptional regulator PadR-like family protein.
  
   
 0.502
yxaF
Putative HTH-type transcriptional regulator YxaF.
  
     0.495
AQR93042.1
Transcriptional regulator PadR-like family protein.
  
   
 0.490
yecD
Isochorismatase family protein YecD.
 
  
 0.463
AQR95622.1
Transcriptional regulator PadR-like family protein.
  
   
 0.452
tetA_1
Tetracycline resistance protein, class B.
       0.448
AQR94271.1
Transcriptional regulator PadR-like family protein.
  
   
 0.435
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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