STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93679.1Metal-dependent hydrolase. (214 aa)    
Predicted Functional Partners:
yecD
Isochorismatase family protein YecD.
 
    0.708
ulaA
Ascorbate-specific permease IIC component UlaA.
  
 
 0.685
fruA_2
PTS system fructose-specific EIIABC component.
    
 0.625
mtlR
Transcriptional regulator MtlR.
 
  
 0.508
AQR97407.1
3-hexulose-6-phosphate synthase.
    
 0.494
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
  
 
 0.474
tetA_1
Tetracycline resistance protein, class B.
       0.467
celCCF
Endoglucanase F precursor.
   
    0.424
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
  
 0.408
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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