Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybbH_1Putative HTH-type transcriptional regulator YbbH. (254 aa)    
Predicted Functional Partners:
ybbH_4
Putative HTH-type transcriptional regulator YbbH.
  
     0.772
murR_1
HTH-type transcriptional regulator MurR.
  
     0.767
glvR_1
HTH-type transcriptional regulator GlvR.
  
     0.749
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.596
AQR95912.1
Phosphotransferase enzyme family protein.
  
     0.525
AQR95913.1
Hypothetical protein.
 
  
 0.514
ybbH_2
Putative HTH-type transcriptional regulator YbbH.
  
     0.478
glcB
PTS system glucoside-specific EIICBA component.
 
  
 0.462
nagC_2
N-acetylglucosamine repressor.
 
 
 0.439
ecfT_1
Energy-coupling factor transporter transmembrane protein EcfT; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
    0.434
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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