STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xdhAXanthine dehydrogenase molybdenum-binding subunit. (781 aa)    
Predicted Functional Partners:
cdhC
Caffeine dehydrogenase subunit gamma.
 0.999
ndhF
Nicotinate dehydrogenase FAD-subunit.
 
 0.997
mop
Aldehyde oxidoreductase.
 
0.969
pucA
Putative xanthine dehydrogenase subunit A.
 
 
 0.965
mocA
Molybdenum cofactor cytidylyltransferase.
 
  
 0.842
sfrB_2
NADPH-Fe(3+) oxidoreductase subunit beta.
  
 
 0.660
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 
 0.593
tadA
tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.557
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.531
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.531
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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