STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndhFNicotinate dehydrogenase FAD-subunit. (277 aa)    
Predicted Functional Partners:
xdhA
Xanthine dehydrogenase molybdenum-binding subunit.
 
 0.997
mop
Aldehyde oxidoreductase.
 
 0.996
cdhC
Caffeine dehydrogenase subunit gamma.
 
 0.996
pucA
Putative xanthine dehydrogenase subunit A.
 
 
 0.968
mocA
Molybdenum cofactor cytidylyltransferase.
 
 
 0.834
sfrB_2
NADPH-Fe(3+) oxidoreductase subunit beta.
  
 
 0.739
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 
 0.700
tadA
tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.647
AQR95864.1
Putative acyltransferase.
    
 0.557
AQR93707.1
Hypothetical protein.
       0.480
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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