Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cdhCCaffeine dehydrogenase subunit gamma. (152 aa)    
Predicted Functional Partners:
xdhA
Xanthine dehydrogenase molybdenum-binding subunit.
 0.999
ndhF
Nicotinate dehydrogenase FAD-subunit.
 
 0.996
pucA
Putative xanthine dehydrogenase subunit A.
 
 
 0.951
mop
Aldehyde oxidoreductase.
 
0.941
mocA
Molybdenum cofactor cytidylyltransferase.
 
  
 0.825
punA
Purine nucleoside phosphorylase 1; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
     
  0.676
AQR93747.1
Hypothetical protein.
     
  0.649
sfrB_2
NADPH-Fe(3+) oxidoreductase subunit beta.
    
 0.630
udp
Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family.
     
  0.624
AQR96087.1
Hypothetical protein; Belongs to the UPF0311 family.
  
 
 0.602
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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