STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93707.1Hypothetical protein. (60 aa)    
Predicted Functional Partners:
AQR95385.1
Hypothetical protein.
 
    0.689
hcr
NADH oxidoreductase hcr.
  
  
 0.647
AQR95386.1
Hemerythrin HHE cation binding domain protein.
 
     0.570
AQR93708.1
Nitroreductase family protein.
       0.538
xdhA
Xanthine dehydrogenase molybdenum-binding subunit.
       0.480
ndhF
Nicotinate dehydrogenase FAD-subunit.
       0.480
cdhC
Caffeine dehydrogenase subunit gamma.
       0.480
mraZ
Protein MraZ; Belongs to the MraZ family.
  
    0.464
hcp_2
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.451
fprA2
Flavo-diiron protein FprA2.
  
  
 0.431
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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