Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
AQR93712.1Subtilase family protein. (572 aa)    
Predicted Functional Partners:
AQR93711.1
Subtilase family protein.
 
    
0.821
AQR96273.1
Putative peptidoglycan binding domain protein.
 
     0.787
ssbB
Single-stranded DNA-binding protein B.
 
     0.670
AQR95836.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.531
sspC2_1
Small, acid-soluble spore protein C2.
  
     0.517
rimM
Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
  
    0.515
AQR95035.1
Hypothetical protein.
  
     0.514
AQR93304.1
LysM domain protein.
  
     0.493
AQR93515.1
Hypothetical protein.
  
  
 0.493
mmpA
Metalloprotease MmpA.
   
    0.487
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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