Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
flr_1Flavoredoxin. (192 aa)    
Predicted Functional Partners:
dacF_1
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
     
 0.661
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.617
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.604
AQR93805.1
Putative NAD(P)H nitroreductase.
 
 
 0.564
nfrA
NADPH-dependent oxidoreductase.
 
 
 0.537
nfrA2_2
FMN reductase.
 
 
 0.530
fbiB
Coenzyme F420:L-glutamate ligase.
 
 
 0.527
nfrA2_1
FMN reductase; Belongs to the flavin oxidoreductase frp family.
 
 
 0.517
AQR96424.1
Putative NAD(P)H nitroreductase.
 
 
 0.507
frp
NADPH-flavin oxidoreductase.
 
 
 0.504
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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