Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dacF_1D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family. (464 aa)    
Predicted Functional Partners:
spoVD_2
Stage V sporulation protein D.
 
 
 0.812
spoVD_3
Stage V sporulation protein D.
 
 
 0.800
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
   
    0.774
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
 
 0.746
penA
Penicillin-binding protein 2B.
 
 
 0.740
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
 
 0.707
ponA
Penicillin-binding protein 1A/1B.
  
  
 0.680
flr_1
Flavoredoxin.
     
 0.661
murC_2
UDP-N-acetylmuramate--L-alanine ligase.
 
  
 0.650
pbpA
Penicillin-binding protein A.
 
 
 0.648
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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