Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ypdBTranscriptional regulatory protein YpdB. (247 aa)    
Predicted Functional Partners:
AQR93762.1
Hypothetical protein.
       0.792
citS_2
Sensor protein CitS.
 
  
 0.768
AQR93763.1
sigmaW regulon antibacterial; Belongs to the UPF0365 family.
       0.722
AQR98183.1
Putative sensor-like histidine kinase.
 
  
 0.706
AQR93680.1
Putative sensor-like histidine kinase.
 
  
 0.678
yehU_1
Sensor histidine kinase YehU.
 
  
 0.671
AQR97288.1
Putative sensor-like histidine kinase.
 
  
 0.660
ypdA_2
Sensor histidine kinase YpdA.
 
  
 0.657
AQR93764.1
Hypothetical protein; NfeD-like C-terminal, partner-binding.
 
     0.653
ypdA_4
Sensor histidine kinase YpdA.
 
  
 0.645
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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