Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR93763.1sigmaW regulon antibacterial; Belongs to the UPF0365 family. (322 aa)    
Predicted Functional Partners:
AQR93764.1
Hypothetical protein; NfeD-like C-terminal, partner-binding.
 
  
 0.987
AQR93762.1
Hypothetical protein.
       0.751
AQR97256.1
Hypothetical protein.
  
  
 0.738
ypdB
Transcriptional regulatory protein YpdB.
       0.722
AQR94167.1
SPFH domain / band 7 family protein.
   
  
 0.655
citS_2
Sensor protein CitS.
       0.514
AQR93833.1
Hypothetical protein; NfeD-like C-terminal, partner-binding.
   
    0.448
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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