Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR93767.1Photosystem I assembly protein Ycf3. (366 aa)    
Predicted Functional Partners:
AQR93770.1
Hypothetical protein.
 
 
 0.902
AQR93772.1
Hypothetical protein.
 
  
 0.880
tagA
Putative N-acetylmannosaminyltransferase; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
       0.799
tuaC
Putative teichuronic acid biosynthesis glycosyltransferase TuaC.
 
 
 0.790
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
 
   
 0.789
AQR92810.1
Hypothetical protein.
  
 
 
 0.783
mreD
Rod shape-determining protein MreD.
 
     0.774
AQR97523.1
Tetratricopeptide repeat protein.
  
   
 0.771
AQR97735.1
Hypothetical protein.
  
 
   0.770
AQR93234.1
Endodeoxyribonuclease RusA.
  
     0.768
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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