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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93767.1Photosystem I assembly protein Ycf3. (366 aa)    
Predicted Functional Partners:
AQR93770.1
Hypothetical protein.
 
 
 0.913
AQR93772.1
Hypothetical protein.
 
  
 0.887
tagA
Putative N-acetylmannosaminyltransferase; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
       0.820
tuaC
Putative teichuronic acid biosynthesis glycosyltransferase TuaC.
 
 
 0.815
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
 
   
 0.794
AQR92810.1
Hypothetical protein.
  
 
 0.792
AQR97523.1
Tetratricopeptide repeat protein.
  
   
 0.775
mreD
Rod shape-determining protein MreD.
 
     0.775
AQR93234.1
Endodeoxyribonuclease RusA.
  
     0.768
AQR97679.1
CYTH domain protein.
  
     0.766
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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