Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rubR2Rubredoxin-2. (53 aa)    
Predicted Functional Partners:
fprA2
Flavo-diiron protein FprA2.
 
 
 0.915
fprA1_1
Flavo-diiron protein FprA1.
 
 
 0.899
AQR96122.1
Hypothetical protein.
    
 0.874
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.745
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.745
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
    
 0.726
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
  
 
 0.687
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.682
AQR92795.1
BFD-like [2Fe-2S] binding domain protein.
  
 
 0.673
AQR95388.1
Bacterioferritin-associated ferredoxin.
  
 
 0.673
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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