STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93796.1Hypothetical protein. (348 aa)    
Predicted Functional Partners:
AQR93797.1
Hypothetical protein.
 
  
 0.940
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.538
AQR97052.1
Beta-monoglucosyldiacylglycerol synthase.
  
     0.480
pgaB
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor.
 
   
 0.452
icaB_2
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor.
 
     0.447
AQR93798.1
Peptidase family M50.
       0.439
AQR96049.1
Hypothetical protein.
   
    0.424
gltB_2
Ferredoxin-dependent glutamate synthase 1.
       0.424
AQR92950.1
Lipoprotein NlpI.
  
     0.405
icaB_3
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor.
 
     0.401
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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