STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93800.1Putative cell wall binding repeat protein. (355 aa)    
Predicted Functional Partners:
lytA_12
Autolysin.
 
  
 0.803
lytA_13
Autolysin.
 
  
 0.801
lytB_4
Putative endo-beta-N-acetylglucosaminidase precursor.
 
   
 0.792
toxA_3
Toxin A.
 
   
 0.783
lytA_23
Autolysin.
 
   
 0.782
toxA_1
Toxin A.
  
    0.773
lytA_5
Autolysin.
  
    0.773
lytA_8
Autolysin.
  
    0.773
lytA_11
Autolysin.
  
    0.773
AQR97179.1
Cadherin-like beta sandwich domain protein.
  
     0.773
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.