STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapH_12,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. (168 aa)    
Predicted Functional Partners:
AQR93816.1
Hypothetical protein; Conserved virulence factor B; Belongs to the CvfB family.
       0.820
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.787
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.787
mtcA1
Beta-carbonic anhydrase 1.
    
 
 0.734
AQR95988.1
Putative lyase.
 
    0.727
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.632
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.602
accC_1
Biotin carboxylase.
    
  0.594
AQR94332.1
Hypothetical protein.
    
  0.562
eno_1
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 0.531
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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