STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93821.1ABC transporter, phosphonate, periplasmic substrate-binding protein. (333 aa)    
Predicted Functional Partners:
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.990
ssuB_2
Aliphatic sulfonates import ATP-binding protein SsuB.
 
 
 0.974
ssuC_3
Putative aliphatic sulfonates transport permease protein SsuC.
  
 
 0.942
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
  
 
 0.827
ssuC_4
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.798
ssuB_1
Aliphatic sulfonates import ATP-binding protein SsuB.
  
 
 0.794
ssuB_3
Aliphatic sulfonates import ATP-binding protein SsuB.
  
 
 0.794
cmpD
Bicarbonate transport ATP-binding protein CmpD.
  
 
 0.794
tauB
Taurine import ATP-binding protein TauB.
  
 
 0.794
ssuC_5
Putative aliphatic sulfonates transport permease protein SsuC.
  
 
 0.770
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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