STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93872.1ABC transporter substrate binding protein. (338 aa)    
Predicted Functional Partners:
AQR93873.1
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  0.999
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
  
  0.971
AQR93871.1
HutP.
 
     0.690
AQR93875.1
Hypothetical protein.
       0.431
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
       0.431
xylG_1
Xylose import ATP-binding protein XylG; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
    
  0.428
mglA_2
Galactose/methyl galactoside import ATP-binding protein MglA.
    
  0.428
xylG_2
Xylose import ATP-binding protein XylG.
    
  0.428
araG
Arabinose import ATP-binding protein AraG.
    
  0.428
barA_2
Signal transduction histidine-protein kinase BarA.
       0.424
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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