Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AQR93873.1Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (304 aa)    
Predicted Functional Partners:
AQR93872.1
ABC transporter substrate binding protein.
 
 0.999
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
     0.953
AQR93871.1
HutP.
 
     0.639
ygaZ
Inner membrane protein YgaZ.
    
  0.587
brnQ
Branched-chain amino acid transport system 2 carrier protein; Component of the transport system for branched-chain amino acids.
     
  0.570
AQR93875.1
Hypothetical protein.
       0.431
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
       0.431
ywqD_1
Tyrosine-protein kinase YwqD.
       0.414
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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