STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93881.1Hypothetical protein; Glycosyltransferase family 28 C-terminal domain. (161 aa)    
Predicted Functional Partners:
AQR93880.1
Oligosaccharide biosynthesis protein Alg14 like protein.
 
   
 0.963
tuaA_1
Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase.
 
   
 0.829
epsF_1
Putative glycosyltransferase EpsF.
 
  
 0.643
AQR93885.1
Glycosyltransferase sugar-binding region containing DXD motif protein.
 
   
 0.621
tagO
Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.
   
 0.580
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
   
 0.580
kdgK_1
2-dehydro-3-deoxygluconokinase.
    
 0.543
kdgK_2
2-dehydro-3-deoxygluconokinase.
    
 0.543
kdgK_3
2-dehydro-3-deoxygluconokinase.
    
 0.543
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.543
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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