STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93908.1Hypothetical protein; Belongs to the UPF0473 family. (92 aa)    
Predicted Functional Partners:
yrrK
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.894
fur
Ferric uptake regulation protein; Belongs to the Fur family.
  
    0.881
AQR93906.1
Hypothetical protein; Belongs to the UPF0297 family.
  
  
 0.858
AQR97667.1
Sporulation inhibitor KapD.
  
     0.624
rnjA_1
Ribonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.614
AQR97924.1
Stress responsive A/B barrel domain protein.
  
     0.604
celE
Endoglucanase E precursor.
  
     0.578
yjjK_2
Putative ABC transporter ATP-binding protein YjjK.
  
     0.574
spoVD_1
Stage V sporulation protein D.
 
     0.554
typA
GTP-binding protein TypA/BipA homolog.
       0.545
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.