STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_3Alkaline phosphatase synthesis sensor protein PhoR. (568 aa)    
Predicted Functional Partners:
phoP_3
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.997
walR_3
Transcriptional regulatory protein WalR.
 0.979
phoR_11
Alkaline phosphatase synthesis sensor protein PhoR.
  
0.940
regX3_3
Sensory transduction protein regX3.
 0.831
yycF_4
Transcriptional regulatory protein YycF.
 0.829
yfiH
Laccase domain protein YfiH; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.823
srrA_1
Transcriptional regulatory protein SrrA.
 0.815
phoP_1
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.811
srrA_8
Transcriptional regulatory protein SrrA.
 0.808
srrA_5
Transcriptional regulatory protein SrrA.
 0.804
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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