Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
ylbJSporulation integral membrane protein YlbJ. (390 aa)    
Predicted Functional Partners:
spmB
Spore maturation protein B.
 
  
 0.862
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.838
yqfd
Putative stage IV sporulation protein YqfD.
 
   
 0.836
spoIIID
Stage III sporulation protein D.
  
  
 0.803
yqfC
YabP family protein.
 
   
 0.800
spoIIIAA
Hypothetical protein.
  
   
 0.794
spoIIR
Stage II sporulation protein SpoIIR.
  
   
 0.792
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
   
 0.792
spoVT_1
Stage V sporulation protein T.
  
   
 0.783
spoIIIAE
Stage III sporulation protein AE precursor.
  
    0.779
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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