Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR94009.1PRC-barrel domain protein. (93 aa)    
Predicted Functional Partners:
lysC
Aspartate kinase Ask_LysC; Belongs to the aspartokinase family.
     
 0.809
ytxC
YtxC-like family protein.
  
   
 0.772
AQR92810.1
Hypothetical protein.
  
     0.769
mreD
Rod shape-determining protein MreD.
  
     0.743
ptrA_1
Protease 3 precursor; Belongs to the peptidase M16 family.
 
    0.739
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
 
   
 0.725
AQR93304.1
LysM domain protein.
  
     0.724
bofA
sigmaK-factor processing regulatory protein BofA.
  
    0.723
AQR95686.1
Hypothetical protein.
  
     0.720
AQR95971.1
Cytochrome D1 heme domain protein.
  
     0.704
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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