Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycgJ_1Putative methyltransferase YcgJ. (204 aa)    
Predicted Functional Partners:
AQR96580.1
3-demethylubiquinone-9 3-methyltransferase.
   
    0.777
AQR96087.1
Hypothetical protein; Belongs to the UPF0311 family.
  
 0.670
rmlD_2
dTDP-4-dehydrorhamnose reductase.
  
 
 0.657
yxaF
Putative HTH-type transcriptional regulator YxaF.
       0.542
AQR98109.1
Hypothetical protein.
  
     0.531
lysS_2
lysine--tRNA ligase.
   
   0.530
AQR98107.1
Hypothetical protein.
  
     0.529
chlD
Hypothetical protein.
   
 0.523
cysC
Putative adenylyl-sulfate kinase.
   
 0.500
AQR95595.1
Tetratricopeptide repeat protein.
  
     0.495
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.