Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
tcyML-cystine transport system permease protein TcyM. (236 aa)    
Predicted Functional Partners:
tcyN_2
L-cystine import ATP-binding protein TcyN.
 
 0.998
tcyK
L-cystine-binding protein TcyK precursor.
 0.996
tcyL
L-cystine transport system permease protein TcyL.
 
  
 
0.990
tcyN_1
L-cystine import ATP-binding protein TcyN.
 
 0.974
tcyJ
L-cystine-binding protein TcyJ precursor.
 0.964
glnQ_3
Glutamine transport ATP-binding protein GlnQ.
 
 0.954
artM_2
Arginine transport ATP-binding protein ArtM.
 
 0.954
artM_3
Arginine transport ATP-binding protein ArtM.
 
 0.954
artM_4
Arginine transport ATP-binding protein ArtM.
 
 0.954
glnQ_1
Glutamine transport ATP-binding protein GlnQ.
 
 0.953
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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