STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgaBpoly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor. (256 aa)    
Predicted Functional Partners:
xynY_1
Endo-1,4-beta-xylanase Y precursor.
    
 0.649
arnT
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
 
 0.526
AQR96062.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
 
 0.526
AQR96339.1
Hypothetical protein.
  
 
 0.526
arnC_1
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
  
  
 0.480
AQR97052.1
Beta-monoglucosyldiacylglycerol synthase.
  
  
 0.480
AQR96692.1
Hypothetical protein.
 
   
 0.465
AQR93796.1
Hypothetical protein.
 
   
 0.452
AQR96603.1
Hypothetical protein.
 
   
 0.449
xynZ_2
Endo-1,4-beta-xylanase Z precursor.
     
 0.446
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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